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Whipple Lab

Harvard MCB

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January 27, 2026

Bongmin Bae awarded new postdoc fellowship→

January 27, 2026/ Amanda Whipple
Bongmin Bae awarded new postdoc fellowship

Bongmin (Min) Bae, a postdoctoral researcher in the Whipple lab, has been awarded a new postdoctoral fellowship from the American Heart Association. The two-year award will support Bae’s research on how epigenetic mechanisms regulate gene expression in the mammalian brain.

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January 27, 2026/ Amanda Whipple/ /Source
December 09, 2025

New Publication Alert→

December 09, 2025/ Amanda Whipple
New Publication Alert

Our new preprint is now live on bioRxiv! We uncover how maternal and paternal genomes adopt distinct 3D chromatin structures across multiple imprinted domains in the mouse brain, and show that these architectures can work together with cis-acting long non-coding RNAs to shape allele-specific gene expression.

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December 09, 2025/ Amanda Whipple/ /Source
October 29, 2025

Open house for G1 students

October 29, 2025/ Amanda Whipple
Open house for G1 students

We invite all current G1 students in a HILS (Harvard Integrative Life Sciences) program to join us for an open house on November 4 at 6:15 PM. Dinner provided. Email for additional details.

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October 29, 2025/ Amanda Whipple/
October 29, 2025

Dina Aljogol competes at the Zymo Biofestival

October 29, 2025/ Amanda Whipple
Dina Aljogol competes at the Zymo Biofestival

Dina was selected as a finalist amongst a competitive pool of applicants and presented a five-minute lightning talk in front of 250+ participants in the Harvard research community.

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October 29, 2025/ Amanda Whipple/ /Source
October 03, 2025

Whipple lab receives funding from the Milton Fund

October 03, 2025/ Amanda Whipple
Whipple lab receives funding from the Milton Fund

Our proposal “Decoding Genomic Imprinting for Therapeutic Innovation,” developed together with lab member Dina Aljogol, has been selected for funding by the Milton Fund from Harvard University. We are grateful to the Harvard community for supporting this work.

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October 03, 2025/ Amanda Whipple/
October 03, 2025

Courtney Whilden and Jen Yi win Meselson Prize

October 03, 2025/ Amanda Whipple
Courtney Whilden and Jen Yi win Meselson Prize

Congratulations to two Whipple lab trainees, Courtney and Jen, for winning “the most beautiful experiment of the year” in the Harvard MCB Department! We also thank Min for her contributions to the original idea for the experiment; it was a truly collaborative effort. Courtney gave a talk at the departmental retreat highlighting this work.

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October 03, 2025/ Amanda Whipple/
May 19, 2025

New Publication Alert→

May 19, 2025/ Amanda Whipple
New Publication Alert

Our latest study introduces a powerful chimeric eCLIP approach to map snoRNA-target RNA interactions across human and mouse cells. By analyzing binding partners of both core and accessory snoRNA-binding proteins, we uncover dozens of novel snoRNA interactions — shedding new light on their roles in RNA processing and modification. Read the full paper here.

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May 19, 2025/ Amanda Whipple/ /Source
May 19, 2025

Amanda Whipple receives 2025 MCB Mentorship Award→

May 19, 2025/ Amanda Whipple
Amanda Whipple receives 2025 MCB Mentorship Award

“The Department of Molecular and Cellular Biology (MCB) at Harvard has announced the recipients of the 2025 MCB Mentorship Awards, honoring four individuals whose dedication to guiding and supporting others has had a profound impact on the department. This year’s awardees—Colin Kim, Amanda Whipple, Isobel Wouk Green, and Claire Ang—were nominated by mentees who praised not only their scientific insight, but also their compassion, encouragement, and tireless investment in others’ growth.”

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May 19, 2025/ Amanda Whipple/ /Source
February 05, 2025

Welcome Fahmida Afreen

February 05, 2025/ Amanda Whipple
Welcome Fahmida Afreen

The Whipple Lab is excited to have Fahmida Afreen join as an undergraduate researcher. Fahmida is a freshman at Harvard College intending to double concentrate in Applied Math and Molecular and Cellular Biology.

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February 05, 2025/ Amanda Whipple/
December 06, 2024

Welcome to Dina Aljogol

December 06, 2024/ Amanda Whipple
Welcome to Dina Aljogol

Dina is a postdoctoral fellow interested in the molecular mechanisms of imprinted gene regulation. Before joining Harvard, she completed her PhD at Hamad Bin Khalifa University, where she studied chromatin organization and long-range promoter contacts in autism spectrum disorders.

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December 06, 2024/ Amanda Whipple/
August 22, 2024

Welcome Isra Galicia Silva

August 22, 2024/ Amanda Whipple
Welcome Isra Galicia Silva

The Whipple Lab welcomes MCO graduate student Isra Galicia Silva to the lab. She received her B.S. in Biochemistry and Microbiology from the Universidad del Valle de Guatemala and completed a Post-Baccalaureate at the University of Pennsylvania, where she worked with the J-Rad Lab on the interplay between metabolism, circadian rhythms, and cellular maturation.

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August 22, 2024/ Amanda Whipple/
August 21, 2024

Min Bae receives F32 fellowship→

August 21, 2024/ Amanda Whipple
Min Bae receives F32 fellowship

Congratulations to Min Bae on receiving a postdoctoral fellowship award to further study how the Mest-Copg2 ICR achieves long-range regulation.

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August 21, 2024/ Amanda Whipple/ /Source
June 28, 2024

Welcome Katherine Gu

June 28, 2024/ Amanda Whipple
Welcome Katherine Gu

The Whipple Lab welcomes our newest member, Katherine Gu. Katherine joins us as a research assistant. She received her B.A. in Biochemistry and Chemical Biology from Vanderbilt University. Outside of lab, she enjoys working out, hiking, and trying restaurants in the Boston area.

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June 28, 2024/ Amanda Whipple/
June 04, 2024

Carlie to join Stanford Greenleaf Lab

June 04, 2024/ Amanda Whipple
Carlie to join Stanford Greenleaf Lab

Congratulations to Carlie McGrath Tydings who will be joining the Greenleaf Lab at the Stanford Department of Genetics in July, as a research assistant.

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June 04, 2024/ Amanda Whipple/
May 23, 2024

Congratulations to Aditya Wirawan

May 23, 2024/ Amanda Whipple
Congratulations to Aditya Wirawan

Congratulations to Aditya for graduating from Harvard! He will be attending graduate school at MIT in the fall.

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May 23, 2024/ Amanda Whipple/
May 06, 2024

Lily Mai accepted into PRISE 2024

May 06, 2024/ Amanda Whipple
Lily Mai accepted into PRISE 2024

Lily will be part of Harvard’s Program for Research Science and Engineering (PRISE) this summer. Her project with the Whipple lab will involve observing hallmarks of nucleolar stress and the role of small nucleoar RNAs on neuronal function.

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May 06, 2024/ Amanda Whipple/
April 16, 2024

Congratulations to Jen Yi

April 16, 2024/ Amanda Whipple
Congratulations to Jen Yi

Congratulations to Research Assistant Jen Yi! This fall, Jen will begin graduate school in the Harvard MCO program.

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April 16, 2024/ Amanda Whipple/
March 01, 2024

Welcome Debaleena Kar

March 01, 2024/ Amanda Whipple
Welcome Debaleena Kar

Debaleena Kar has joined the Whipple lab as a Postdoctoral Fellow. Her research focuses on the role of snoRNA in translation.

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March 01, 2024/ Amanda Whipple/
January 03, 2024

Cheers to Dr. Daniel Loftus

January 03, 2024/ Amanda Whipple
Cheers to Dr. Daniel Loftus

Daniel successfully defended his PhD thesis work on "Investigating the cis-regulatory mechanisms underlying neuronal imprinted expression." We thank Daniel for all his contributions to the lab and wish him the best of luck in his next career steps at Intellia Therapeutics!

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January 03, 2024/ Amanda Whipple/
November 28, 2023

Amanda Whipple receives funding from the Foundation for Prader-Willi Research

November 28, 2023/ Amanda Whipple
Amanda Whipple receives funding from the Foundation for Prader-Willi Research

This grant aims to investigate the role of SNORD116 in ribosome biology. For more details on this project and others funded by FPWR, a blog with the funded descriptions and a link to the recorded webinar presented by Dr. Theresa Strong, Director of Research Programs at FPWR can be found here.

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November 28, 2023/ Amanda Whipple/
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